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Trimming of sequence reads alters RNA-Seq gene expression estimates

BMC Bioinformatics

Feb 26, 2016

Claire R WilliamsCharles C Kim

Abstract

High-throughput RNA-Sequencing (RNA-Seq) has become the preferred technique for studying gene expression differences between biological samples and for discovering novel isoforms, though the techniques to analyze the resulting data are still immature. One pre-processing step that is wid...read more

Mentioned in this Paper

Exons
Genome
Genes
Malignant Neoplasm of Stomach
Tissue-Specific Gene Expression
Gene Expression
Sequencing
High Throughput Analysis
Sequence Analysis, RNA
Afferent Neuron
96
2
456
Paper Details
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Trimming of sequence reads alters RNA-Seq gene expression estimates

BMC Bioinformatics

Feb 26, 2016

Claire R WilliamsCharles C Kim

PMID: 26911985

DOI: 10.1186/s12859-016-0956-2

Abstract

High-throughput RNA-Sequencing (RNA-Seq) has become the preferred technique for studying gene expression differences between biological samples and for discovering novel isoforms, though the techniques to analyze the resulting data are still immature. One pre-processing step that is wid...read more

Mentioned in this Paper

Exons
Genome
Genes
Malignant Neoplasm of Stomach
Tissue-Specific Gene Expression
Gene Expression
Sequencing
High Throughput Analysis
Sequence Analysis, RNA
Afferent Neuron
96
2
456

Similar Papers Found In These Feeds

Neuronal Cell Types

There are diverse ranges of neurons, which are defined by their structural, functional, connectional and molecular properties. For example, some type of neurons includes sensory, sympathetic, and motor neurons. Discover the latest research on neuronal cell types here.

Parasite Genetics

Parasite genetics is the study of the genetic material of parasites. Here is the latest research on parasite genetics.

Related Papers

PloS One

RNA-Seq gene profiling--a systematic empirical comparison

PloS OneOctober 1, 2014
Nuno A FonsecaAlvis Brazma
Nucleic Acids Research

RNASEQR--a streamlined and accurate RNA-seq sequence analysis program

Nucleic Acids ResearchDecember 27, 2011
Leslie Y ChenLeroy E Hood
Paper Details
References
  • References
  • Citations8
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
  • References
  • Citations8
1
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