Use of the University of Minnesota Biocatalysis/Biodegradation Database for study of microbial degradation.

Microbial Informatics and Experimentation
L B Ellis, L P Wackett

Abstract

Microorganisms are ubiquitous on earth and have diverse metabolic transformative capabilities important for environmental biodegradation of chemicals that helps maintain ecosystem and human health. Microbial biodegradative metabolism is the main focus of the University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD). UM-BBD data has also been used to develop a computational metabolic pathway prediction system that can be applied to chemicals for which biodegradation data is currently lacking. The UM-Pathway Prediction System (UM-PPS) relies on metabolic rules that are based on organic functional groups and predicts plausible biodegradative metabolism. The predictions are useful to environmental chemists that look for metabolic intermediates, for regulators looking for potential toxic products, for microbiologists seeking to understand microbial biodegradation, and others with a wide-range of interests.

References

Feb 1, 1997·Journal of Bacteriology·H R Beller, A M Spormann
Apr 16, 1998·Journal of Bacteriology·M L de SouzaL P Wackett
Apr 30, 1998·Critical Reviews in Microbiology·D M Stamper, O H Tuovinen
Jun 17, 1998·Proceedings of the National Academy of Sciences of the United States of America·W B WhitmanW J Wiebe
Jan 11, 2000·Nucleic Acids Research·L B EllisL P Wackett
Dec 26, 2001·Nucleic Acids Research·Minoru KanehisaAkihiro Nakaya
Jun 26, 2003·Nucleic Acids Research·Elisabeth GasteigerAmos Bairoch
Nov 17, 2004·Environmental Science & Technology·Jeffrey K PostleJames P Vandenbrook
Nov 30, 2004·Nature Genetics·Amir AharoniDan S Tawfik
Mar 3, 2006·Acta Crystallographica. Section F, Structural Biology and Crystallization Communications·Oliver EinslePeter M H Kroneck
Mar 1, 1995·Applied and Environmental Microbiology·R M ZablotowiczW J Hickey
Mar 17, 2007·ChemMedChem·Ruud van Deursen, Jean-Louis Reymond
Apr 24, 2007·Advances in Applied Microbiology·Lawrence P Wackett
Nov 28, 2007·Journal of Bacteriology·Yin-Ru ChiangGeorg Fuchs
Feb 16, 2008·Biochemistry·Joseph R WarnerShelley D Copley
Jun 6, 2008·Nucleic Acids Research·Lynda B M EllisLawrence P Wackett
Jan 1, 1984·Biotechnology and Bioengineering·R C Diluccio, D J Kirwan
Jun 6, 2009·Nucleic Acids Research·Yanli WangStephen H Bryant
Jun 10, 2009·Journal of the American Chemical Society·Lorenz C Blum, Jean-Louis Reymond
Jun 25, 2009·Journal of the American Chemical Society·Ram P GargRonald J Parry
Jul 22, 2009·Nature Chemical Biology·Shelley D Copley
Aug 26, 2009·Biology Direct·Hervé Isambert, Richard R Stein
Nov 3, 2009·Nucleic Acids Research·Minoru KanehisaMika Hirakawa
Feb 4, 2010·Pest Management Science·L Jason KrutzSteven J Thomson
May 4, 2010·Nucleic Acids Research·Yuki MoriyaMinoru Kanehisa
Aug 31, 2010·Environmental Science & Technology·Damian E HelblingKathrin Fenner
Nov 11, 2010·Nucleic Acids Research·Maurice ScheerDietmar Schomburg
Nov 13, 2010·Nucleic Acids Research·Dennis A BensonEric W Sayers
Mar 11, 2011·Environmental Science & Technology·Carsten PrasseThomas A Ternes
Apr 14, 2011·Nucleic Acids Research·Junfeng GaoLawrence P Wackett
May 17, 2012·Microbial Informatics and Experimentation·Lynda Bm Ellis, Lawrence P Wackett

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Citations

May 9, 2014·Biological Procedures Online·Pankaj Kumar Arora, Hanhong Bae
Jan 19, 2016·The Science of the Total Environment·Werner BrackMartin Krauss
Feb 13, 2016·Environmental Science & Technology·Rebekka GuldeKathrin Fenner
May 17, 2012·Microbial Informatics and Experimentation·Lynda Bm Ellis, Lawrence P Wackett
Apr 4, 2015·Database : the Journal of Biological Databases and Curation·Jorge S OliveiraAna Teresa Freitas
Jun 23, 2016·Environmental Science and Pollution Research International·Benjamin FrindtAstrid Rehorek
Feb 26, 2019·Biotechnology and Bioengineering·Sara A AminSoha Hassoun
Apr 30, 2013·Biodegradation·Andrea BagiRoald Kommedal
Oct 1, 2019·Environmental Toxicology and Chemistry·Laurence H HandRobin G Oliver
Jul 23, 2018·Metabolic Engineering·Udit GuptaProdromos Daoutidis
Apr 23, 2021·Journal of Microbiology & Biology Education·Serina L RobinsonBetsy M Martinez-Vaz

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Software Mentioned

PathPred
PPS
UM
BBD

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