Get paper from

journal cover

Using 2k + 2 bubble searches to find SNPs in k-mer graphs

bioRxiv

Apr 24, 2014

Reda Younsi, Dan MacLean

Get paper from

Abstract

Single Nucleotide Polymorphism (SNP) discovery is an important preliminary for understanding genetic variation. With current sequencing methods we can sample genomes comprehensively. SNPs are found by aligning sequence reads against longer assembled references. De Bruijn graphs are effi...read more

Mentioned in this Paper

Gene Polymorphism
Anatomy, Regional
Gene Mutant
Single Nucleotide Polymorphism
Genome
R Programming Language
Cocaine
Arabidopsis thaliana <plant>
Sequence Alignment
Structure
11
27
Paper Details
References
    • References
    • Citations

      References currently unavailable

      We're still populating references for this paper, please check back later.
    • References
    • Citations

      No citations available

      This paper may not have been cited yet.
  • Using 2k + 2 bubble searches to find SNPs in k-mer graphs

    bioRxiv

    Apr 24, 2014

    Reda Younsi, Dan MacLean

    PMID: 990004507

    DOI: 10.1101/004507

    Abstract

    Single Nucleotide Polymorphism (SNP) discovery is an important preliminary for understanding genetic variation. With current sequencing methods we can sample genomes comprehensively. SNPs are found by aligning sequence reads against longer assembled references. De Bruijn graphs are effi...read more

    Mentioned in this Paper

    Gene Polymorphism
    Anatomy, Regional
    Gene Mutant
    Single Nucleotide Polymorphism
    Genome
    11
    27
    Paper Details
    References
    • References
    • Citations

      References currently unavailable

      We're still populating references for this paper, please check back later.
    • References
    • Citations

      No citations available

      This paper may not have been cited yet.
  • Get paper from

    © 2019 Meta ULC. All rights reserved.
    /papers/using-2k-2-bubble-searches-to-find-snps-in-k-mer/990004507