Using 2k + 2 bubble searches to find SNPs in k-mer graphs

doi:10.1101/004507

Using 2k + 2 bubble searches to find SNPs in k-mer graphs

bioRxiv

Apr 24, 2014

Reda Younsi, Dan MacLean

PMID: 990004507

DOI: 10.1101/004507

Abstract

Single Nucleotide Polymorphism (SNP) discovery is an important preliminary for understanding genetic variation. With current sequencing methods we can sample genomes comprehensively. SNPs are found by aligning sequence reads against longer assembled references. De Bruijn graphs are effi...read more

Mentioned in this Paper

Sequencing

Anatomy, Regional

Cytochrome-c Oxidase Deficiency

Nucleotides

R Programming Language

Trees (plant)

Arabidopsis thaliana extract

GPER protein, human

Structure

Gene Mutant

Paper Details

References

References
Citations

References currently unavailable
We're still populating references for this paper, please check back later.

References
Citations

No citations available
This paper may not have been cited yet.

Cytochrome Activity

This feed focuses on cytochromes, including cytochrome C and the cytochromes P450 (CYP) enzyme system, and their involvement in the activation and inactivation of drugs.

BioRxiv Preprints

BioRxiv is the preprint server for biology, operated by Cold Spring Harbor Laboratory. Here are the latest biology preprint articles from bioRxiv.

Reward Processing

This feed focuses on neural structures and processes associated with incentive salience, associative learning, and positively-valenced emotions. Here is the latest research.

Psychoactive Drugs

Psychoactive drugs are psychotherapeutic drugs used to modify emotions and behavior in the treatment of psychiatric illnesses. Here is the latest research on psychoactive drugs and the pathways they modulate.