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Using 2k + 2 bubble searches to find SNPs in k-mer graphs

bioRxiv

Apr 24, 2014

Reda Younsi, Dan MacLean

Abstract

Single Nucleotide Polymorphism (SNP) discovery is an important preliminary for understanding genetic variation. With current sequencing methods we can sample genomes comprehensively. SNPs are found by aligning sequence reads against longer assembled references. De Bruijn graphs are effi...read more

Mentioned in this Paper

Sequencing
Anatomy, Regional
Cytochrome-c Oxidase Deficiency
Nucleotides
R Programming Language
Trees (plant)
Arabidopsis thaliana extract
GPER protein, human
Structure
Gene Mutant
11
27
Paper Details
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Using 2k + 2 bubble searches to find SNPs in k-mer graphs

bioRxiv

Apr 24, 2014

Reda Younsi, Dan MacLean

PMID: 990004507

DOI: 10.1101/004507

Abstract

Single Nucleotide Polymorphism (SNP) discovery is an important preliminary for understanding genetic variation. With current sequencing methods we can sample genomes comprehensively. SNPs are found by aligning sequence reads against longer assembled references. De Bruijn graphs are effi...read more

Mentioned in this Paper

Sequencing
Anatomy, Regional
Cytochrome-c Oxidase Deficiency
Nucleotides
R Programming Language
Trees (plant)
Arabidopsis thaliana extract
GPER protein, human
Structure
Gene Mutant
11
27
Paper Details
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  • Citations
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
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