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Using 2k + 2 bubble searches to find SNPs in k-mer graphs
bioRxiv
Apr 24, 2014
Reda Younsi, Dan MacLean
PMID: 990004507
DOI: 10.1101/004507
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Abstract
Single Nucleotide Polymorphism (SNP) discovery is an important preliminary for understanding genetic variation. With current sequencing methods we can sample genomes comprehensively. SNPs are found by aligning sequence reads against longer assembled references. De Bruijn graphs are effi...read more
Mentioned in this Paper
Gene Polymorphism
Anatomy, Regional
Gene Mutant
Single Nucleotide Polymorphism
Genome
R Programming Language
Cocaine
Arabidopsis thaliana <plant>
Sequence Alignment
Structure
11
27
Paper Details
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Using 2k + 2 bubble searches to find SNPs in k-mer graphs
Abstract
Single Nucleotide Polymorphism (SNP) discovery is an important preliminary for understanding genetic variation. With current sequencing methods we can sample genomes comprehensively. SNPs are found by aligning sequence reads against longer assembled references. De Bruijn graphs are effi...read more
Mentioned in this Paper
Gene Polymorphism
Anatomy, Regional
Gene Mutant
Single Nucleotide Polymorphism
Genome
11
27
Paper Details
References
- References
- Citations
References currently unavailable
We're still populating references for this paper, please check back later.
- References
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