Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data

NeuroImage
Matthew F GlasserStephen M Smith

Abstract

Temporal fluctuations in functional Magnetic Resonance Imaging (fMRI) have been profitably used to study brain activity and connectivity for over two decades. Unfortunately, fMRI data also contain structured temporal "noise" from a variety of sources, including subject motion, subject physiology, and the MRI equipment. Recently, methods have been developed to automatically and selectively remove spatially specific structured noise from fMRI data using spatial Independent Components Analysis (ICA) and machine learning classifiers. Spatial ICA is particularly effective at removing spatially specific structured noise from high temporal and spatial resolution fMRI data of the type acquired by the Human Connectome Project and similar studies. However, spatial ICA is mathematically, by design, unable to separate spatially widespread "global" structured noise from fMRI data (e.g., blood flow modulations from subject respiration). No methods currently exist to selectively and completely remove global structured noise while retaining the global signal from neural activity. This has left the field in a quandary-to do or not to do global signal regression-given that both choices have substantial downsides. Here we show that temporal ICA c...Continue Reading

References

Nov 15, 2001·NeuroImage·M W WoolrichS M Smith
Apr 28, 2004·NeuroImage·Paul M MaceyRonald M Harper
Oct 24, 2007·NeuroImage·Jonathan C W BrooksMark Jenkinson
Feb 7, 2008·IEEE Transactions on Neural Networks·A Hyvärinen
Oct 28, 2008·NeuroImage·Catie ChangGary H Glover
Apr 3, 2009·Journal of Neurophysiology·Michael D FoxMarcus E Raichle
Apr 10, 2009·Proceedings of the National Academy of Sciences of the United States of America·Nicola FilippiniClare E Mackay
May 5, 2010·Proceedings of the National Academy of Sciences of the United States of America·Marieke L SchölvinckDavid A Leopold
Jun 10, 2010·Human Brain Mapping·Jeffrey S AndersonDeborah Yurgelun-Todd
Jun 10, 2011·Journal of Neurophysiology·B T Thomas YeoRandy L Buckner
Sep 6, 2011·NeuroImage·Xiaoqian J ChaiSusan Whitfield-Gabrieli
Oct 11, 2011·NeuroImage·Hongjian He, Thomas T Liu
Jan 3, 2012·NeuroImage·Prantik KunduPeter A Bandettini
Feb 11, 2012·Proceedings of the National Academy of Sciences of the United States of America·Stephen M SmithKamil Ugurbil
May 15, 2013·NeuroImage·Matthew F GlasserUNKNOWN WU-Minn HCP Consortium
May 21, 2013·NeuroImage·Deanna M BarchUNKNOWN WU-Minn HCP Consortium
May 21, 2013·NeuroImage·David C Van EssenUNKNOWN WU-Minn HCP Consortium
May 25, 2013·NeuroImage·Stephen M SmithUNKNOWN WU-Minn HCP Consortium
May 28, 2013·Brain Connectivity·Ziad S SaadRobert W Cox
Jul 23, 2013·Frontiers in Human Neuroscience·Stephen J GottsAlex Martin
Sep 3, 2013·NeuroImage·Jonathan D PowerSteven E Petersen
Nov 19, 2013·Trends in Cognitive Sciences·Stephen M SmithDavid C Van Essen
Jan 5, 2014·Frontiers in Human Neuroscience·Satoru Hayasaka
Mar 19, 2014·The Hastings Center Report·Martha J Farah
Mar 25, 2014·NeuroImage·John MuschelliStewart H Mostofsky
May 7, 2014·Proceedings of the National Academy of Sciences of the United States of America·Genevieve J YangAlan Anticevic
Jun 19, 2014·NeuroImage·Emma C RobinsonMark Jenkinson

❮ Previous
Next ❯

Citations

Apr 17, 2019·Nanomaterials·Daniel Mihai TeleanuRaluca Ioana Teleanu
Feb 8, 2020·Cerebral Cortex·Martin Szinte, Tomas Knapen
Oct 5, 2019·Scientific Reports·Jingwei LiLucina Q Uddin
Oct 16, 2019·Nature Neuroscience·Andrew T ReidMichael W Cole
Jun 5, 2020·Cerebral Cortex·Jonathan D PowerSteven E Petersen
Jul 3, 2020·Human Brain Mapping·Martina J LundTobias Kaufmann
Jul 15, 2020·Journal of Neural Engineering·Bianca De BlasiIlaria Boscolo Galazzo
Aug 20, 2019·Psychophysiology·Ewa BeldzikTadeusz Marek
Dec 25, 2019·Proceedings of the National Academy of Sciences of the United States of America·David C Van EssenMatthew F Glasser
Nov 23, 2019·Communications Biology·Pinar Senay ÖzbayJeff Duyn
Nov 19, 2019·Frontiers in Systems Neuroscience·Shiori AmemiyaOsamu Abe
Oct 22, 2020·Nature Communications·Charles J LynchJonathan D Power
Dec 4, 2020·Psychological Medicine·Ashish K SahibKatherine L Narr
Dec 18, 2020·ELife·Golia ShafieiBratislav Misic
Jan 2, 2021·NeuroImage·Michiel CottaarSaad Jbabdi
Nov 2, 2020·NeuroImage·Jorge A SalasCatie Chang
Dec 19, 2020·NeuroImage. Clinical·Bidhan LamichhaneAmmar H Hawasli
Feb 9, 2019·NeuroImage·Jingyuan E ChenGary H Glover
Oct 4, 2020·Journal of Affective Disorders·Qi LiuVilma Gabbay
Feb 1, 2021·NeuroImage·Samuel J HarrisonLars Kasper
Jan 24, 2021·NeuroImage·Takuya HayashiDavid C Van Essen
Oct 28, 2020·Nature Neuroscience·Janine BijsterboschEugene P Duff
Mar 4, 2020·NeuroImage·Richard F BetzelDaniel P Kennedy
Mar 8, 2020·NeuroImage·Jingyuan E ChenJonathan R Polimeni
Jan 12, 2020·Communications Biology·Pinar Senay ÖzbayJeff Duyn
Jul 3, 2020·Current Opinion in Behavioral Sciences·Jeff H DuynDante Picchioni
Mar 21, 2021·NeuroImage. Clinical·Shinsuke KoikeUNKNOWN Brain/MINDS Beyond Human Brain MRI Group

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.