Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data

Methods in Molecular Biology
Bruce J BoltKevin L Howe

Abstract

WormBase ParaSite ( parasite.wormbase.org ) is a comprehensive resource for the genomes of parasitic nematodes and flatworms (helminths). It currently includes genomic data for over 100 helminth species, adding value by way of consistent functional annotation, gene comparative analysis and gene expression analysis. We provide several ways of exploring the data including a choice of genome browsers, genome and gene summary pages, text and sequence searching, a query wizard, bulk downloads, and programmatic interfaces. WormBase ParaSite is released three to six times per year, and is developed in collaboration with WormBase ( www.wormbase.org ) and Ensembl Genomes ( www.ensemblgenomes.org ).

Citations

Nov 5, 2019·Nucleic Acids Research·Lionel Urán LandaburuFernán Agüero
Apr 10, 2021·Wellcome Open Research·Geetha SankaranarayananGabriel Rinaldi
Jun 27, 2019·Scientific Reports·Rahul TyagiMakedonka Mitreva
Nov 26, 2020·Nucleic Acids Research·UNKNOWN UniProt Consortium
Oct 12, 2020·Trends in Parasitology·Paul M Selzer, Christian Epe
Aug 5, 2021·ACS Chemical Neuroscience·Louise E AtkinsonAngela Mousley

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