XCMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules.

Nature Methods
Xavier Domingo-AlmenaraGary Siuzdak

Abstract

We report XCMS-MRM and METLIN-MRM ( http://xcmsonline-mrm.scripps.edu/ and http://metlin.scripps.edu/ ), a cloud-based data-analysis platform and a public multiple-reaction monitoring (MRM) transition repository for small-molecule quantitative tandem mass spectrometry. This platform provides MRM transitions for more than 15,500 molecules and facilitates data sharing across different instruments and laboratories.

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Citations

Jul 20, 2019·Proteomics·Danielle L PetersDaniel Figeys
Nov 18, 2018·Electrophoresis·Biswapriya B Misra, Subhashree Mohapatra
Apr 6, 2019·Clinical Chemistry and Laboratory Medicine : CCLM·Biswapriya Misra
Aug 30, 2019·Metabolomics : Official Journal of the Metabolomic Society·Katrin FreiburghausCédric Bovet
Apr 6, 2019·Proteomics·Ashish Kumar, Biswapriya B Misra
Aug 7, 2019·Advances in Nutrition·Padma MaruvadaSteven H Zeisel
Jul 1, 2020·American Journal of Physiology. Gastrointestinal and Liver Physiology·Xi QianCheleste M Thorpe
Jul 8, 2020·Proceedings of the National Academy of Sciences of the United States of America·Jessica J YeRuslan Medzhitov
Sep 10, 2020·Science Signaling·Carlos GuijasGary Siuzdak
Dec 22, 2019·Nature Communications·Xavier Domingo-AlmenaraGary Siuzdak
Dec 22, 2020·Journal of Pharmaceutical and Biomedical Analysis·Abhishek JainDaniel Globisch
Jan 24, 2021·Nature Protocols·Erica L-W MajumderGary Siuzdak
Feb 18, 2021·Talanta·Patrycja PuchalskaPeter A Crawford
Feb 5, 2021·Journal of Environmental Management·Elizabeth R RogersChung-Ho Lin
Oct 22, 2020·Archives of Endocrinology and Metabolism·Breno Sena De San-MartinLuciani Renata Silveira de Carvalho
Jul 28, 2021·Analytical Chemistry·Jingchuan XueGary Siuzdak
Jun 24, 2021·Journal of Gastroenterology and Hepatology·Xiaoling GaoChaojun Wei
Dec 4, 2020·Analytical Chemistry·Svetlana KutuzovaDouglas McCloskey
Oct 10, 2018·Analytical Chemistry·Carlos Guijas, Gary Siuzdak
Aug 27, 2021·Metabolites·James William AllwoodPierre Pétriacq
Jan 28, 2020·Journal of Proteome Research·Kendra J AdamsUNKNOWN Alzheimer’s Disease Metabolomics Consortium
Dec 25, 2021·Bioinformatics·Justin G ChitpinTheodore J Perkins

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Methods Mentioned

BETA
reversed-phase chromatography

Software Mentioned

METLIN
MRM
MRMAnalyzer
ProteoWizard
MRMPROBS
XCMS
iMPAQT
Skyline
SRMAtlas
mzML

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